The API reference contains detailed descriptions of the different end-user classes, functions, methods, etc.
This API reference only contains end-user documentation. If you are looking to hack away at scArches’ internals, you will find more detailed comments in the source code.
Import scarches as:
import scarches as sca
After reading the data (
sca.data.read), you can you can instantiate one of the implemented models from
sca.models module (currently we support
TotalVI) and train it on your dataset.